datcnv /cc:\data\ctd\%2%3.XMLCON /ic:\data\ctd\%2%3.hex /oc:\data\ctd\%4 /pc:\data\ctd\doc\processing_setup\DatCnv_sssg.psa AlignCTD /ic:\data\ctd\%4\%2%3.cnv /oc:\data\ctd\%4 /pc:\data\ctd\doc\processing_setup\alignCTD_sssg.psa CellTM /ic:\data\ctd\%4\%2%3.cnv /oc:\data\ctd\%4 /pc:\data\ctd\doc\processing_setup\CellTM_sssg.psa Derive /cc:\data\ctd\%2%3.xmlcon /ic:\data\ctd\%4\%2%3.cnv /oc:\data\ctd\%4 /pc:\data\ctd\doc\processing_setup\Derive_sssg.psa binavg /ic:\data\ctd\%4\%2%3.cnv /oc:\data\ctd\%4 /pc:\data\ctd\doc\processing_setup\BinAvg_sssg.psa trans /ic:\data\ctd\%4\%2%3.cnv /oc:\data\ctd\%4 /pc:\data\ctd\doc\processing_setup\Trans_sssg.psa split /ic:\data\ctd\%4\%2%3.cnv /oc:\data\ctd\%4 /pc:\data\ctd\doc\processing_setup\Split_sssg.psa @ this gives up and down as one cast asciiout /ic:\data\ctd\%4\%2%3.cnv /oc:\data\ctd\%4 /pc:\data\ctd\doc\processing_setup\ASCII_Out_sssg.psa @comment out if no split asciiout /ic:\data\ctd\%4\u%2%3.cnv /oc:\data\ctd\%4 /pc:\data\ctd\doc\processing_setup\ASCII_Out_sssg.psa asciiout /ic:\data\ctd\%4\d%2%3.cnv /oc:\data\ctd\%4 /pc:\data\ctd\doc\processing_setup\ASCII_Out_sssg.psa @Comment out if no rosette Bottlesum /cc:\data\ctd\%2%3.xmlcon /ic:\data\ctd\%4\%2%3.ros /oc:\data\ctd\%4 /pc:\data\ctd\doc\processing_setup\BottleSum_sssg.psa