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Much of our software is now on GitHub. It includes software for inline data processing and analysis, software associated with profiling floats and ocean color remote sensing.
Code for estimation of phytoplankton accessory pigment from hyperspectral Rrs data, used in Chase et al., JGR-Oceans, 2017: pigments_from_Rrs.
Ali Chase's code for decomposition of particulate absorption spectra into Gaussian components, used in Chase et al., MiO, 2014: decomposition_code, and a newer version decomposition_code_new.
Codes for ecosystem simulations used in Behrenfeld and Boss, ARMS, 2014:
MATLAB code for measuring seawater inherent optical properties in and out of the water. Summary Code
Software to invert remote sensing reflectance to IOPs providing confidence intervals for retreived parameter. Code Documentation (Chapter 8 in IOCCG, 2006)
Calibrated Near-Forward Volume Scattering Function Obtained from the LISST Particle Sizer. Code Documentation
BHMIE. Translation from fortran to Matlab of the Bohren and Huffman Mie Code. See Bohren and Huffman, 1983, Absorption and Scattering of Light by Small Particles, Wiley. Provides all the necessary output to compute the polarized scattering matrix for spheres. Code
FASTMIE. Vectorized version of BHMIE. Code
Software to read APEX Float 0005 edf files.
Software to compute the spectral slope of beam attenuation (power-law fit). ReadMe Example Driver Code
Software to compute the spectral slope of dissolved absorption (exponential fit). ReadMe Example Driver Data File Code
Software to compute the spectral slope of dissolved absorption (fit to exponential + constant). ReadMe Example Driver Data File Code