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Biography
Nils is a scientist in the field of Optical Oceanography. Since 2022, he has been a Assistant Research Professor at the University of Maine where he completed his PhD. Nils’ main research interest is to characterize the optical signature of plankton in the open ocean, investigating at multiple scales from individual cells (using cytometry) to global patterns (using remote sensing). Currently, he focuses on above water radiometry spending most of his time on the HyperNav system, which is aimed to vicariously calibrate the upcoming satellite PACE. He also led some engineering project that he shared with the oceanographic community including the development of pySAS: an autonomous solar tracker for above water radiometry; Inlinino: a software data logger for optical oceanography.
Education
- PhD 2020, Oceanography, University of Maine, Orono, ME
- MS 2017, Oceanography, University of Maine, Orono, ME
- MS 2015, Embedded Systems Engineering, ISEP, Paris, France
Peer-Reviewed Scientific Articles
2024
Kramer, S. J., Bolaños, L. M., Catlett, D., Chase, A. P., Behrenfeld, M. J., Boss, E. S., Haëntjens, N., ..., & Siegel, D. A. (2024). Toward a synthesis of phytoplankton communities composition methods for global‐scale application. Limnology and Oceanography: Methods. https://doi.org/10.1002/lom3.10602
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2022
Chase, A. P., Boss, E. S., Haëntjens, N., Culhane, E., Roesler, C., Karp-Boss, L. (2022). Plankton Imagery Data Inform Satellite-Based Estimates of Diatom Carbon. Geophysical Research Letters, e2022GL098076. https://doi.org/10.1029/2022GL098076
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Haëntjens, N., Boss, E. S., Graff, J. R., Chase, A. P., & Karp‐Boss, L. (2022). Phytoplankton size distributions in the western North Atlantic and their seasonal variability. Limnology and Oceanography. https://doi.org/10.1002/lno.12172
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Haëntjens, N., Forsythe, K., Denholm, B., Loftin, J., & Boss, E. (2022). pySAS: Autonomous Solar Tracking System for Surface Water Radiometric Measurements. Oceanography. https://doi.org/10.5670/oceanog.2022.210
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de Vargas, C., Le Bescot, N., Pollina, T., Henry, N., Romac, S., Colin, S., Haëntjens, N., ... Prakash, M. (2022) M. Plankton Planet: a frugal, cooperative measure of aquatic life at the planetary scale. Frontiers in Marine Science, 1419. 10.3389/fmars.2022.936972
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2021
Diaz, B.P., Knowles, B., Johns, C.T., Laber, C.P., Bondoc, K. G. V., Haramaty, L., Natale, F., Harvey, E. L., Kramer, S. J., Bolaños, L.M., Lowenstein, D. P., Fredricks, H. F., Graff, J., Westberry, T. K., Mojica, K. D. A., Haëntjens, N., Baetge, N., Gaube, P., Boss, E., Carlson, C. A., Behrenfeld, M. J., Van Mooy, B. A. S., & Bidle, K. D., (2021). Seasonal mixed layer depth shapes phytoplankton physiology, viral production, and accumulation in the North Atlantic. Nature communications, 1, 6634. https://doi.org/10.1038/s41467-021-26836-1
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Flores, J. M., Bourdin, G., Kostinski, A. B., Altaratz, O., Dagan, G., Lombard, F., Haëntjens, N., Boss, E., Sullivan, M.B., Gorsky, G., Lang-Yona, N., Trainic, M., Romac, S., Voolstra, C., Rudich, Y., Vardi, A., & Koren, I. (2021). Diel cycle of sea spray aerosol concentration. Nature communications, 12(1), 1-12. https://doi.org/10.1038/s41467-021-25579-3
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Freney, E., Sellegri, K., Nicosia, A., Williams, L. R., Rinaldi, M., Trueblood, J. T., Prévôt, A. S. H., Thyssen, M., Grégori, G., Haëntjens, N., Dinasquet, J., Obernosterer, I., Van Wambeke, F., Engel, A., Zäncker, B., Desboeufs, K., Asmi, E., Timonen, H., & Guieu, C. (2021). Mediterranean nascent sea spray organic aerosol and relationships with seawater biogeochemistry. Atmospheric Chemistry and Physics, 21(13), 10625–10641. https://doi.org/10.5194/acp-21-10625-2021
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Marañón, E., Van Wambeke, F., Uitz, J., Boss, E. S., Dimier, C., Dinasquet, J., Engel, A., Haëntjens, N., Pérez-Lorenzo, M., Taillandier, V., & Zäncker, B. (2021). Deep maxima of phytoplankton biomass, primary production and bacterial production in the Mediterranean Sea. Biogeosciences, 18(5), 1749–1767. https://doi.org/10.5194/bg-18-1749-2021
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Sellegri, K., Nicosia, A., Freney, E., Uitz, J., Thyssen, M., Grégori, G., Engel, A., Zäncker, B., Haëntjens, N., Mas, S., Picard, D., Saint-Macary, A., Peltola, M., Rose, C., Trueblood, J., Lefevre, D., D’Anna, B., Desboeufs, K., Meskhidze, N., … Law, C. S. (2021). Surface ocean microbiota determine cloud precursors. Scientific Reports, 11(1), 281. https://doi.org/10.1038/s41598-020-78097-5
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Siegel, D. A., Cetinić, I., Graff, J. R., Lee, C. M., Nelson, N., Perry, M. J., Ramos, I. S., Steinberg, D. K., Buesseler, K., Hamme, R., Fassbender, A. J., Nicholson, D., Omand, M. M., Robert, M., Thompson, A., Amaral, V., Behrenfeld, M., Benitez-Nelson, C., Bisson, K., …, Haëntjens, N., … Zhang, X. (2021). An operational overview of the EXport Processes in the Ocean from RemoTe Sensing (EXPORTS) Northeast Pacific field deployment. Elementa: Science of the Anthropocene, 9(1), 00107. https://doi.org/10.1525/elementa.2020.00107
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Yang, B., Fox, J., Behrenfeld, M. J., Boss, E. S., Haëntjens, N., Halsey, K. H., Emerson, S. R., & Doney, S. C. (2021). In Situ Estimates of Net Primary Production in the Western North Atlantic With Argo Profiling Floats. Journal of Geophysical Research: Biogeosciences, 126(2). https://doi.org/10.1029/2020JG006116
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2020
Bolaños, L. M., Karp-Boss, L., Choi, C. J., Worden, A. Z., Graff, J. R., Haëntjens, N., Chase, A. P., Della Penna, A., Gaube, P., Morison, F., Menden-Deuer, S., Westberry, T. K., O’Malley, R. T., Boss, E., Behrenfeld, M. J., & Giovannoni, S. J. (2020). Small phytoplankton dominate western North Atlantic biomass. The ISME Journal, 14(7), 1663–1674. https://doi.org/10.1038/s41396-020-0636-0
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Chase, A. P., Kramer, S. J., Haëntjens, N., Boss, E. S., Karp‐Boss, L., Edmondson, M., & Graff, J. R. (2020). Evaluation of diagnostic pigments to estimate phytoplankton size classes. Limnology and Oceanography: Methods, lom3.10385. https://doi.org/10.1002/lom3.10385
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Fox, J., Behrenfeld, M. J., Haëntjens, N., Chase, A., Kramer, S. J., Boss, E., Karp-Boss, L., Fisher, N. L., Penta, W. B., Westberry, T. K., & Halsey, K. H. (2020). Phytoplankton Growth and Productivity in the Western North Atlantic: Observations of Regional Variability From the NAAMES Field Campaigns. Frontiers in Marine Science, 7, 24. https://doi.org/10.3389/fmars.2020.00024
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Haëntjens, N., Della Penna, A., Briggs, N., Karp‐Boss, L., Gaube, P., Claustre, H., & Boss, E. (2020). Detecting Mesopelagic Organisms Using Biogeochemical‐Argo Floats. Geophysical Research Letters, 47(6). https://doi.org/10.1029/2019GL086088
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Schulien, J. A., Della Penna, A., Gaube, P., Chase, A. P., Haëntjens, N., Graff, J. R., Hair, J. W., Hostetler, C. A., Scarino, A. J., Boss, E. S., Karp-Boss, L., & Behrenfeld, M. J. (2020). Shifts in Phytoplankton Community Structure Across an Anticyclonic Eddy Revealed From High Spectral Resolution Lidar Scattering Measurements. Frontiers in Marine Science, 7, 493. https://doi.org/10.3389/fmars.2020.00493
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Yang, B., Boss, E. S., Haëntjens, N., Long, M. C., Behrenfeld, M. J., Eveleth, R., & Doney, S. C. (2020). Phytoplankton Phenology in the North Atlantic: Insights From Profiling Float Measurements. Frontiers in Marine Science, 7, 139. https://doi.org/10.3389/fmars.2020.00139
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2019
Boss, E., Haëntjens, N., Ackleson, S. G., Balch, B., Chase, A., Dall’Olmo, G., Freeman, S., Liu, Y., Loftin, J., Neary, W., Nelson, N., Novak, M., Slade, W. H., Proctor, C., Tortell, P., & Westberry, T. K. (2019). IOCCG Ocean Optics and Biogeochemistry Protocols for Satellite Ocean Colour Sensor Validation Inherent Optical Property Measurements and Protocols: Best Practices for the Collection and Processing of Ship-Based Underway Flow-Through Optical Data (v4. 0): Vol. 4.0 (A. R. Neeley & A. Mannino, Eds.). OCCG Protocol Series. http://doi.org/10.25607/OBP-664
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Gorsky, G., Bourdin, G., Lombard, F., Pedrotti, M. L., Audrain, S., Bin, N., Boss, E., Bowler, C., Cassar, N., Caudan, L., Chabot, G., Cohen, N. R., Cron, D., De Vargas, C., Dolan, J. R., Douville, E., Elineau, A., Flores, J. M., Ghiglione, J. F., Haëntjens, N., … Karsenti, E. (2019). Expanding Tara Oceans Protocols for Underway, Ecosystemic Sampling of the Ocean-Atmosphere Interface During Tara Pacific Expedition (2016–2018). Frontiers in Marine Science, 6, 750. https://doi.org/10.3389/fmars.2019.00750
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Saliba, G., Chen, C.-L., Lewis, S., Russell, L. M., Rivellini, L.-H., Lee, A. K. Y., Quinn, P. K., Bates, T. S., Haëntjens, N., Boss, E. S., Karp-Boss, L., Baetge, N., Carlson, C. A., & Behrenfeld, M. J. (2019). Factors driving the seasonal and hourly variability of sea-spray aerosol number in the North Atlantic. Proceedings of the National Academy of Sciences, 116(41), 20309–20314. https://doi.org/10.1073/pnas.1907574116
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2018
Arteaga, L., Haëntjens, N., Boss, E., Johnson, K. S., & Sarmiento, J. L. (2018). Assessment of Export Efficiency Equations in the Southern Ocean Applied to Satellite‐Based Net Primary Production. Journal of Geophysical Research: Oceans, 123(4), 2945–2964. https://doi.org/10.1002/2018JC013787
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Boss, E., Haëntjens, N., Westberry, T. K., Karp-Boss, L., & Slade, W. H. (2018). Validation of the particle size distribution obtained with the laser in-situ scattering and transmission (LISST) meter in flow-through mode. Optics Express, 26(9), 11125. https://doi.org/10.1364/OE.26.011125
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2017
Haëntjens, N., Boss, E., & Talley, L. D. (2017). Revisiting Ocean Color algorithms for chlorophyll a and particulate organic carbon in the Southern Ocean using biogeochemical floats. Journal of Geophysical Research: Oceans, 122(8), 6583–6593. https://doi.org/10.1002/2017JC012844
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Johnson, K. S., Plant, J. N., Coletti, L. J., Jannasch, H. W., Sakamoto, C. M., Riser, S. C., Swift, D. D., Williams, N. L., Boss, E., Haëntjens, N., Talley, L. D., & Sarmiento, J. L. (2017). Biogeochemical sensor performance in the SOCCOM profiling float array. Journal of Geophysical Research: Oceans, 122(8), 6416–6436. https://doi.org/10.1002/2017JC012838
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Roesler, C., Uitz, J., Claustre, H., Boss, E., Xing, X., Organelli, E., Briggs, N., Bricaud, A., Schmechtig, C., Poteau, A., D’Ortenzio, F., Ras, J., Drapeau, S., Haëntjens, N., & Barbieux, M. (2017). Recommendations for obtaining unbiased chlorophyll estimates from in situ chlorophyll fluorometers: A global analysis of WET Labs ECO sensors: Unbiased chlorophyll from in situ fluorometers. Limnology and Oceanography: Methods, 15(6), 572–585. https://doi.org/10.1002/lom3.10185
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2016
Gerbi, G. P., Boss, E., Werdell, P. J., Proctor, C. W., Haëntjens, N., Lewis, M. R., Brown, K., Sorrentino, D., Zaneveld, J. R. V., Barnard, A. H., Koegler, J., Fargher, H., DeDonato, M., & Wallace, W. (2016). Validation of Ocean Color Remote Sensing Reflectance Using Autonomous Floats. Journal of Atmospheric and Oceanic Technology, 33(11), 2331–2352. https://doi.org/10.1175/JTECH-D-16-0067.1
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Released Software
- Inlinino: Data logger for oceanographic instruments (e.g., ACS, HyperBB, LISST, BB3)
- Inline-Analysis: Matlab software to process data from flow-through underway systems (e.g. ACS, BB3, LISST, WSCD, HyperBB, SUVF, TSG).
- getOC: Command line utility to download Ocean Color images.
- pySAS: Autonomous solar tracker for Satlantic HyperSAS.
- HyperNAV analysis: Analysis in real-time of hyperspectral upwelling radiance profiles from HyperNAV system mounted on Navis floats.
- pylr2: Linear regression type II for python.
- MISCToolbox: Matlab Toolbox for Ocean Optics
- ifcb-tools: Set of scripts and instructions to process data from the Imaging Flow CytoBot (IFCB)
- FloatExplorer: Dashboard of NAAMES profilers (RUDICS server)
- FloatProcess: Python package to process data from BGC-Argo floats in real-time
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